Accepted papers

BMC Bioinformatics released our RCG-2013 publications on Monday, October 14th, 2013.


Transcript features alone enable accurate prediction and understanding of gene expression in S. cerevisiae

Hadas Zur, Tamir Tuller
BMC Bioinformatics 2013, 14(Suppl 15):S1 (15 October 2013)


The dynamics of alternative pathways to compensatory substitution

Chris A Nasrallah
BMC Bioinformatics 2013, 14(Suppl 15):S2 (15 October 2013)


On the inversion-indel distance

Eyla Willing, Simone Zaccaria, Marília DV Braga, Jens Stoye
BMC Bioinformatics 2013, 14(Suppl 15):S3 (15 October 2013)


Lateral gene transfer, rearrangement, reconciliation

Murray Patterson, Gergely Szöllősi, Vincent Daubin, Eric Tannier
BMC Bioinformatics 2013, 14(Suppl 15):S4 (15 October 2013)


Gene tree correction guided by orthology

Manuel Lafond, Magali Semeria, Krister M Swenson, Eric Tannier, Nadia El-Mabrouk
BMC Bioinformatics 2013, 14(Suppl 15):S5 (15 October 2013)


Fast algorithms and heuristics for phylogenomics under ILS and hybridization

Yun Yu, Nikola Ristic, Luay Nakhleh
BMC Bioinformatics 2013, 14(Suppl 15):S6 (15 October 2013)


Phase change for the accuracy of the median value in estimating divergence time

Arash Jamshidpey, David Sankoff
BMC Bioinformatics 2013, 14(Suppl 15):S7 (15 October 2013)


Practical aliquoting of flowering plant genomes

Chunfang Zheng, David Sankoff
BMC Bioinformatics 2013, 14(Suppl 15):S8 (15 October 2013)


Sorting genomes with rearrangements and segmental duplications through trajectory graphs

Mingfu Shao, Yu Lin, Bernard Moret
BMC Bioinformatics 2013, 14(Suppl 15):S9 (15 October 2013)


Genome-wide probabilistic reconciliation analysis across vertebrates

Owais Mahmudi, Joel Sjöstrand, Bengt Sennblad, Jens Lagergren
BMC Bioinformatics 2013, 14(Suppl 15):S10 (15 October 2013)


In silico experimental evolution: a tool to test evolutionary scenarios

Bérénice Batut, David P Parsons, Stephan Fischer, Guillaume Beslon, Carole Knibbe
BMC Bioinformatics 2013, 14(Suppl 15):S11 (15 October 2013)


Quantitative synteny scoring improves homology inference and partitioning of gene families

Raja Ali, Sayyed Muhammad, Mehmood Khan, Lars Arvestad
BMC Bioinformatics 2013, 14(Suppl 15):S12 (15 October 2013)


Haploid to diploid alignment for variation calling assessment

Veli Mäkinen, Jani Rahkola
BMC Bioinformatics 2013, 14(Suppl 15):S13 (15 October 2013)


Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat

Vincent Ranwez, Yan Holtz, Gautier Sarah, Morgane Ardisson, Sylvain Santoni, Sylvain Glémin, Muriel Tavaud-Pirra, Jacques David
BMC Bioinformatics 2013, 14(Suppl 15):S15 (15 October 2013)


Finishing bacterial genome assemblies with Mix

Hayssam Soueidan, Florence Maurier, Alexis Groppi, Pascal Sirand-Pugnet, Florence Tardy, Christine Citti, Virginie Dupuy, Macha Nikolski
BMC Bioinformatics 2013, 14(Suppl 15):S16 (15 October 2013)


Reconstructing the modular recombination history of Staphylococcus aureus phages

Krister M Swenson, Paul Guertin, Hugo Deschênes, Anne Bergeron
BMC Bioinformatics 2013, 14(Suppl 15):S17 (15 October 2013)


Mapping proteins in the presence of paralogs using units of coevolution

Mohammed El-Kebir, Tobias Marschall, Inken Wohlers, Murray Patterson, Jaap Heringa, Alexander Schönhuth, Gunnar W Klau
BMC Bioinformatics 2013, 14(Suppl 15):S18 (15 October 2013)


The dynamics of functional classes of plant genes in rediploidized ancient polyploids

Eric CH Chen, Carlos Buen Abad Najar, Chunfang Zheng, Alex Brandts, Eric Lyons, Haibao Tang, Lorenzo Carretero-Paulet, Victor A Albert, David Sankoff
BMC Bioinformatics 2013, 14(Suppl 15):S19 (15 October 2013)

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